Basic Information
VIS ID
TVIS44002121
Fusion event
HTLV-1-LINC00653 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
18775901/18795257 (Hg38)
End
18775901/18795257 (Hg38)
Orient
-
Location type
ncRNA_exonic
Fragile sites / regions
FRA20A
Target gene
LINC00653
Nearest miRNA
hsa-mir-103a-2/Upstream/324566; hsa-mir-1-1/Downstream/7412929;
Nearest TSS
ENST00000382410/Upstream/728; ENST00000377428/Downstream/18469;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/206809, chr20-CpG: 155/Downstream/416558
Upstream sequence
atccaaaagcggatgacctgtgttcactctggggtgaagatttaacatttaaatgtattataattaggctgtaaatgcaaaaaggtgaaacatagggcac
Downstream sequence
aagttcacgatctgtgcaatctccagagaccagtctgatctagcctgcagctggcagtcatctgtcaagaaggggctctttgtagcccagagtagctgtc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate