Basic Information
VIS ID
TVIS44002126
Fusion event
HTLV-1-LOC102723596 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p26.1
Reference genome
GRCh37/hg19
Start
6008478/5966791 (Hg38)
End
6008478/5966791 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102723596
Nearest miRNA
hsa-mir-4790/Upstream/716536; hsa-let-7g/Downstream/4313560;
Nearest TSS
ENST00000440867/Upstream/3949; ENST00000435651/Downstream/181693;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/778286, chr3-CpG: 71/Downstream/894345
Nearby gene
GRM7-AS3(No orient, 665567)
Upstream sequence
TATAAGCCAGCTTTACTAGCCAGTTTTATTCCAATGATTTTGCTTACAAAATGGTTCCAGGTTTCTAGTACATAAGTTATATCTGATTAGAAGTGAACTG
Downstream sequence
TCTGCAATGAAATATAGATATTTCCTATTTGGTTTGGGAAAATCTAAATAAATCAGGTAGCTATGACCTACTTTCTCAGAGGATCCAAACCATCAGCCCT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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