Basic Information
VIS ID
TVIS44002130
Fusion event
HTLV-1-LOC105377171 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
77918840/77869689 (Hg38)
End
77918840/77869689 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377171
Nearest miRNA
hsa-let-7g/Upstream/2131326; hsa-mir-12124/Downstream/1638198;
Nearest TSS
ENST00000440867/Upstream/234764; ENST00000461186/Downstream/177105;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/771441, chr3-CpG: 49/Downstream/1149224
Nearby gene
ROBO2(+219726) ;
Upstream sequence
AGCCCAGGTTCTGTCACTAATCACGTGACTATGGACAAATCCAaggcatattactatgaaactgaggaaagtcaagtttgagcacccattacttgtgcat
Downstream sequence
gcttcttttgttactacaagggaacttatcaatatgatacatgattatatgtctttgtaaaatttatgggagtggtatatttcgatgataattaataaga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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