Basic Information
VIS ID
TVIS44002150
Fusion event
HTLV-1-LOC105376058 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
69155867/41082638 (Hg38)
End
69155867/41082638 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376058
Nearest miRNA
hsa-mir-101-2/Upstream/153546; hsa-let-7a-1/Downstream/151117;
Nearest TSS
ENST00000422679/Upstream/8903; ENST00000619442/Downstream/21178;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/7696, chr9-CpG: 103/Downstream/40898
Nearby gene
PGM5P2(-8013) ;
Upstream sequence
acattaatatttatttgcagaaatgattcactgttagcagtggacaaggccatgaacacacacttataacacagcaacagatacaagaaagtgtgactga
Downstream sequence
ggctccattactgctcctgtcctgttcaccttaactttcatctccacgtgtcagtgcttcctcatcttgcttgacttgaagtcagtgcatttcttcaagc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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