Basic Information
VIS ID
TVIS44002162
Fusion event
HTLV-1-LOC107984222 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
36351772/36062844 (Hg38)
End
36351772/36062844 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984222
Nearest miRNA
hsa-mir-1265/Upstream/421592; hsa-mir-107/Downstream/6934719;
Nearest TSS
ENST00000439456/Upstream/163881; ENST00000426283/Downstream/26545;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/297393, chr10-CpG: 51/Downstream/1062373
Nearby gene
PCAT5(No orient, 261924)
Upstream sequence
cttcagcctgggcaacaagagtgaaaacttcatttcaaaaacaaaaaaGTTTTAAAAAAGACAAACCAACATCTTTTAGGGACCTCTAGATTTCATGTGA
Downstream sequence
TTCTCTGCAGTATTCACCTGAGTAAGAGGGCATTTTGTTTTTCTTAATTATCTCCCTCAAAAAGCATGATCACCCCAGTATCCAACCCTGTGCCTACCTC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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