Basic Information
VIS ID
TVIS44002194
Fusion event
HTLV-1-chr22 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
47779249/47383499 (Hg38)
End
47779249/47383499 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA22A
Nearest miRNA
hsa-let-7a-3/Upstream/1269731; hsa-mir-12114/Downstream/890865;
Nearest TSS
ENST00000624155/Upstream/37930; ENST00000426452/Downstream/103589;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/169927, chr22-CpG: 25/Downstream/825846
Nearby gene
LOC339685(-9958) ;
Upstream sequence
ACAGCTGAAATCTTTCAGGGTGGGGAACTCATGTGCTACCTGGAGAAGGCGGCCAAGAATGGATTGTGCCTACCAAGCTGTTCCAAGAAGCCCACAAAGT
Downstream sequence
GATACTAGTGGAAGGATATGGCAGAAGGTCAGGAACTGGTCCTTTGGAGAGAATGTTTCTGTCTGCCCTTGGCCATCTGAGCCACACAAGAGGTAGATAA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate