Basic Information
VIS ID
TVIS44002226
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
103370781/100608499 (Hg38)
End
103370781/100608499 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/2379282; hsa-mir-12126/Downstream/5992429;
Nearest TSS
ENST00000422679/Upstream/30420; ENST00000494890/Downstream/420210;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/9469, chr9-CpG: 96/Downstream/419831
Nearby gene
CAVIN4(+20112) ;
Upstream sequence
gatgaatagattgttaaggtatgtaactctctggagatgtttaactgtgaaggatggaaaagaggagagggtagatggggcatgaatggagATTATATAT
Downstream sequence
ATATTCCATTGGTTTTTATTAAGGATCAGAGGATGGGGGTGGGTTACTTGATTTGGATGCTTGTTTGATTGGATGTTACATGTATGTTCTACTTGATTGG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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