Basic Information
VIS ID
TVIS44002227
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q27.1
Reference genome
GRCh37/hg19
Start
139623983/140541818 (Hg38)
End
139623983/140541818 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRAXD
Nearest miRNA
hsa-let-7f-2/Upstream/617587; hsa-mir-105-1/Downstream/384342;
Nearest TSS
ENST00000429181/Upstream/36702; ENST00000607004/Downstream/145887;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/30401, chrX-CpG: 25/Downstream/222663
Nearby gene
SOX3(-36758) ;
Upstream sequence
aacctctgcttcctgggttcaagtgattctcctgcctcagcctcccgagtagctggcactataggcgcgtgccaccatgtccggctaattttttttgtat
Downstream sequence
atatatatatatattttttttttttagtggagacgagggtttcaccatgttgaccaggctggtgtcaaactcctgacctcaagtgatctacccgcttcag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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