Basic Information
VIS ID
TVIS44002248
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p13
Reference genome
GRCh37/hg19
Start
35147157/35125610 (Hg38)
End
35147157/35125610 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA11E
Nearest miRNA
hsa-mir-1343/Upstream/183690; hsa-let-7a-2/Downstream/884488;
Nearest TSS
ENST00000527297/Upstream/140977; ENST00000526025/Downstream/12116;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/208777, chr11-CpG: 53/Downstream/13218
Nearby gene
LOC100507144(-7040) ;
Upstream sequence
TTTAATAATAAGTGGGGTCTAGGTGAATATTTTTCTTTTTGCTAAAGCTGTTTCCAACATTGCAGAGGCCCTATTTTGTCAAGAAAAGAAGAACATATCC
Downstream sequence
ATAGGGGGTACTGCAGGCAGAATCACGTGTATGTGTGTACACTGGCTAGTTCATTGGTAGGGAGCAGGGTCAATGGGCACACTTGCAGAGAGCTTTGTCC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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