Basic Information
VIS ID
TVIS44002256
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
129333489/128848944 (Hg38)
End
129333489/128848944 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12E
Nearest miRNA
hsa-let-7i/Upstream/554766; hsa-mir-6763/Downstream/3733053;
Nearest TSS
ENST00000382841/Upstream/22108; ENST00000539044/Downstream/4483;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1998, chr12-CpG: 118/Downstream/4381
Nearby gene
GLT1D1(+4490) ;
Upstream sequence
tgagcggagatcctaccactgcactccaacctgggggacagagtaagaccctgttctcaagaaaaaaaggaggaggaaagaggaatttgcccccccttcc
Downstream sequence
ccacccccctccattttccccactgcctcactgcttgagcgggcacatttcatgtcatcttctcagcaaccacccccaccattccccctcctccctcaaa
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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