Basic Information
VIS ID
TVIS44002272
Fusion event
HTLV-1-LOC105378178 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
49387957/48918754 (Hg38)
End
49387957/48918754 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105378178
Nearest miRNA
hsa-mir-208a/Upstream/1157650; hsa-mir-1185-1/Downstream/1047645;
Nearest TSS
ENST00000550708/Upstream/426987; ENST00000557531/Downstream/158751;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1242368, chr14-CpG: 30/Downstream/667178
Nearby gene
RPS29(-655433) ;
Upstream sequence
gaatgaaactggatcactacctctcatcttataaaaaaatgaactcaagatggatcaaagacctaaatgtaagacctgaaaccataaaaattctagaaga
Downstream sequence
taaccctggaaaaattcttctggacattgggctaggcaaagaattcatgactaaaaccccaagagcaaatgcaacaaaaacaaaaacaaatatatgggac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate