Basic Information
VIS ID
TVIS44002294
Fusion event
HTLV-1-chr18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
8880608/8880610 (Hg38)
End
8880608/8880610 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3976/Upstream/2506185; hsa-mir-1-2/Downstream/1878974;
Nearest TSS
ENST00000575820/Upstream/50687; ENST00000497577/Downstream/222020;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/94964, chr18-CpG: 58/Downstream/221808
Nearby gene
MTCL1(No orient, 47833)
Upstream sequence
ttggctgagtggaaacagctcaaaccttggagtagaccaattatcaggcaattttcctaactctgcttttacaagagtttccctatcaattactgaatac
Downstream sequence
ctattgtgtctttttccctcagtcacccacccgggaggaaccatctgtcctcccgggaactgtcctaaagggagttcctcctaggtctggtcagaccttt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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