Basic Information
VIS ID
TVIS44002301
Fusion event
HTLV-1-LINC00276 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
14531637/14391513 (Hg38)
End
14531637/14391513 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00276
Nearest miRNA
hsa-mir-3125/Upstream/1654069; hsa-mir-10b/Downstream/4956916;
Nearest TSS
ENST00000437798/Upstream/668465; ENST00000450715/Downstream/9445;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1672620, chr2-CpG: 248/Downstream/240740
Upstream sequence
ggaacctcatctcattagcaggaagttgaataattttccctagatattaatacctgtcccctattcctttaattattcaagtaccacaatgtcatacttg
Downstream sequence
acccaaagtgctaaagtattcttttaatgtcaagcatggaataaactggactccagccagtctgcaatgtgatagatctcaatggtcacactgtatcttt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate