Basic Information
VIS ID
TVIS44002302
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
22049512/21826640 (Hg38)
End
22049512/21826640 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3125/Upstream/2478135; hsa-mir-10b/Downstream/3502000;
Nearest TSS
ENST00000437798/Upstream/116017; ENST00000419013/Downstream/138911;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/782551, chr2-CpG: 256/Downstream/1558218
Nearby gene
LINC01822(-115988) ;
Upstream sequence
attctctgaaagcagttaggatattgtctCAAATTTTCCTATAATACACATATGTGTGCATTTTTCTTTATACAATTTTGTACTTTTTAAGGTCTCTTCA
Downstream sequence
ACTTAGGTGTTCATATTTTAAATTCTGAGAACTTTCTTCTGATTCTAGTTTTATCTATTTCTACCTCTTAATTTATTTGTTTTACTTCTTTCTGGTACTG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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