Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene54771607555083085646836355568194555735115561060355613104556197175562214355615144556168785560753855608216556170145561712955619985
Basic Information
VIS ID
TVIS44002317
Fusion event
HTLV-1-ERC2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
55654013/55619985 (Hg38)
End
55654013/55619985 (Hg38)
Orient
-
Location type
Intronic
Target gene
ERC2
Nearest miRNA
hsa-let-7g/Upstream/2773433; hsa-mir-12124/Downstream/232507;
Nearest TSS
ENST00000440867/Upstream/9075; ENST00000487739/Downstream/27241;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/131669, chr3-CpG: 93/Downstream/847855
Upstream sequence
AGGATAAACTTCATCTCTTGAGTTCAAAGACAACTGGCCTCTCTAGGGGTTTCAATCAAGGGTTCTTTGAAGGATTGCTCTCAAATTCATTAAAGAAATT
Downstream sequence
TCACTGACTTCACAGACTTTGGCATTAAATAGATAACCTGAGCTCTTCATTGCCTGGCAAAATGACTGTTCACCTTTGAAGCTCTGCAAATTGGGATTAA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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