Basic Information
VIS ID
TVIS44002326
Fusion event
HTLV-1-MIR1273H integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
39194604/39192984 (Hg38)
End
39194604/39192984 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MIR1273H
Nearest miRNA
hsa-mir-12113/Upstream/324857; hsa-mir-1243/Downstream/218926;
Nearest TSS
ENST00000502981/Upstream/10436; ENST00000512448/Downstream/6494;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/10379, chr4-CpG: 48/Downstream/173044
Upstream sequence
ctcagtcattgtctgggaacagcccatgagaaagcacagcccagctcattgaggtgatggattccaaagcctagcagctggggctcatgggcagttacac
Downstream sequence
tttctgcaaacggagggaaatctgagaggcacattattgcggctacaGCATTTATTTTAAAAAAGGAAAAAAAGATTAAAATGCGTATTTATCTTTTGTA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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