VISDB Viral Integration Site DataBase

VIS ID

TVIS44002327

Fusion event

HTLV-1-ANTXR2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr4

Cytoband

q21.21

Reference genome

Start

End

80903929/79982775 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-186-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-943 ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-6857-3p ; hsa-mir-3941 ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-7161-3p ; hsa-mir-888-3p ; hsa-mir-6768-5p ; hsa-mir-5190 ; hsa-mir-548p ; hsa-mir-5692a ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-1288-5p ; hsa-mir-4678 ; hsa-mir-5694 ; hsa-mir-3529-3p ; hsa-mir-377-3p ; hsa-mir-4724-3p ; hsa-mir-342-3p ; hsa-mir-8485 ; hsa-mir-889-3p ; hsa-mir-1277-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-629-3p ; hsa-mir-937-5p ; hsa-mir-6873-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-642a-5p ; hsa-mir-5702 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-5571-5p ; hsa-mir-8081 ; hsa-mir-627-5p ; hsa-mir-6830-3p ; hsa-mir-3065-5p ; hsa-mir-3613-3p ; hsa-mir-1264

Nearest miRNA

hsa-mir-12113/Upstream/3407149; hsa-mir-1243/Downstream/2770562;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/17781, chr4-CpG: 81/Downstream/89446

Upstream sequence

CTCCAAAGAACAGCTTAACTGCATCTAGCAACTGTTTATAATCATGGATAATTGGCAATGAGGTATCTGCCTCAGAGGATATTTCAACAATAAAGGGCAA

Downstream sequence

GCTCTCAGGGAAAATGTCCATTGCTTCAAGATCTAATGTGGTCCAGAAAAGTAAGAATCACTGTCAGATGACCTATATAAACACTTTGCTAATGACAACC