Basic Information
VIS ID
TVIS44002357
Fusion event
HTLV-1-LINC00824 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
129568029/128555783 (Hg38)
End
129568029/128555783 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00824
Nearest miRNA
hsa-mir-1204/Upstream/405595; hsa-mir-10400/Downstream/928274;
Nearest TSS
ENST00000518652/Upstream/459264; ENST00000519048/Downstream/410218;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/705805, chr8-CpG: 122/Downstream/1383343
Upstream sequence
cacaatataaccttgagaaacatttcttaaagaagtgaatAAATGAACGAgtgaaggagtgatttttttctcattttacaaatgaaacaagtcaaaaaca
Downstream sequence
aagaggggaagtaagctagtccagctctacaaccatttagtggcacagctagtattaacattttgatttcctaactcacaatcTAGGATTTTATTTTCGT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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