Basic Information
VIS ID
TVIS44002358
Fusion event
HTLV-1-LOC107986976 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.22
Reference genome
GRCh37/hg19
Start
132882261/131870014 (Hg38)
End
132882261/131870014 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986976
Nearest miRNA
hsa-mir-1204/Upstream/1861561; hsa-mir-10400/Downstream/1176467;
Nearest TSS
ENST00000518652/Upstream/559542; ENST00000520362/Downstream/34074;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/827511, chr8-CpG: 92/Downstream/33989
Nearby gene
EFR3A(+34095) ;
Upstream sequence
ttttttttactatggcacttagtatttgaaattaccttattctattttagtatctattatctttctcttctaaactgtgagctccttgaggggagagacc
Downstream sequence
atgtctgtttttctttactcctgcaactccagtgcctagatcagtgtctagaacatattagATTGGTTAATTAAAGTttacttttaatggcaaaaacctc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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