Basic Information
VIS ID
TVIS44002362
Fusion event
HTLV-1-MIR1268A integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
131198519/128436240 (Hg38)
End
131198519/128436240 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MIR1268A
Nearest miRNA
hsa-let-7a-1/Upstream/43526; hsa-mir-12126/Downstream/1433365;
Nearest TSS
ENST00000422679/Upstream/5495; ENST00000444993/Downstream/18946;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/14952, chr9-CpG: 144/Downstream/19581
Upstream sequence
tgcctctcgggctcaagagattctcctgcctcagcctccccagtaactgggattacaggcacccaccacaaggcctggctaatttttctatttttatttt
Downstream sequence
tatttatttatttattttgagatggagtcttgctcttttgcccaggctggagtgcagtggcatgatctcagctcactgcaacctctgcctcccgcgtccc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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