Basic Information
VIS ID
TVIS44002380
Fusion event
HTLV-1-LINC01357 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
113396286/112853664 (Hg38)
End
113396286/112853664 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01357
Nearest miRNA
hsa-mir-101-1/Upstream/391831; hsa-mir-11399/Downstream/28386;
Nearest TSS
ENST00000473358/Upstream/3021; ENST00000416193/Downstream/68728;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3490, chr1-CpG: 17/Downstream/101700
Nearby gene
LINC01356(No orient, 3021)
Upstream sequence
gctctgggtcaggactcctttccattaacaatttcattgcatgaaatacccaagataggtaaatccatagagacagaaagcagattagtggttgccaggg
Downstream sequence
gctagggatagggagaaagggagttgtgtccggatttggtgggttcttggtctcgctgacttcaagaatgaagccgcggaccctcgcggtgttacagctc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate