Basic Information
VIS ID
TVIS44002401
Fusion event
HTLV-1-LOC105370150 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
32033833/31459696 (Hg38)
End
32033833/31459696 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370150
Nearest miRNA
hsa-mir-2276/Upstream/7297192; hsa-mir-1267/Downstream/8204338;
Nearest TSS
ENST00000623511/Upstream/39707; ENST00000380314/Downstream/279846;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/258799, chr13-CpG: 70/Downstream/386797
Nearby gene
B3GLCT(No orient, 127422)
Upstream sequence
attggtgtaaagattatttggataggatggaaacacactttggaaaGAACAAGCCACTACTTTTGAGTGTCCTCACTTCCTTCCACCTGTTATCCAGGAC
Downstream sequence
ATACACACTGAGGGGTGTGCTGGTaaagactccaatctgtagcagctgccaatttctgtggtgtaaatactcccactgtggtttatttcaagccatcaaT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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