Basic Information
VIS ID
TVIS44002404
Fusion event
HTLV-1-LOC100506071 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
31350637/30881431 (Hg38)
End
31350637/30881431 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC100506071
Nearest miRNA
hsa-mir-208a/Upstream/3248153; hsa-mir-1185-1/Downstream/133215;
Nearest TSS
ENST00000550708/Upstream/844; ENST00000555417/Downstream/3757;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/6163, chr14-CpG: 113/Downstream/144157
Upstream sequence
ATGGACACACTGGGTTCCCAAACTGTAAGTTCAGGATCTAAGACTGCCTGGGCAGACTGAGTAGATCTGAGTGCCTCCTTTTTGGAATAAAAGAATTTAG
Downstream sequence
AAAACTGTGTGCTATCTATATAAGAACCAGAAGGTAGACTGGAGAGTCCTGTTGCTTACACAAGTCACCTCTGCTTATCTACTCTGCTCAATTCCTAATT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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