Basic Information
VIS ID
TVIS44002442
Fusion event
HTLV-1-LOC107986067 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
20245884/20204392 (Hg38)
End
20245884/20204392 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986067
Nearest miRNA
hsa-mir-12127/Upstream/66751; hsa-let-7g/Downstream/5460481;
Nearest TSS
ENST00000440867/Upstream/18100; ENST00000566804/Downstream/183857;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/17928, chr3-CpG: 86/Downstream/2167609
Nearby gene
SGO1(-18159) ;
Upstream sequence
cagaaaagtgccaaaagtagtacaaagggccaaagagctgtttatatccttcagccagatttcccagttgttagcattgtccatatttgcatcctctttc
Downstream sequence
tctcttcctctacacacacacacacacacacacacacacacacacacacacacacacatcacatcacatcacatcactgtaggtttttccccctgtgcca
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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