Basic Information
VIS ID
TVIS44002451
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q34.2
Reference genome
GRCh37/hg19
Start
177408617/176487466 (Hg38)
End
177408617/176487466 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2063602; hsa-mir-1305/Downstream/5681827;
Nearest TSS
ENST00000502981/Upstream/160510; ENST00000504017/Downstream/182155;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/166785, chr4-CpG: 100/Downstream/304623
Nearby gene
SPCS3(+155221) ;
Upstream sequence
aatagattaaaatagactgggctcagtggctcatgcttgtatcctagcactttgggagattgaggtgggtggattgcttgaggccaggagttagagacca
Downstream sequence
acctggccaacatggcaaaaccctgtatctactaaaaattagctgagcatggtggcacacacctgtaatcccagctacttgggaggctaaggcacaagaa
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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