Basic Information
VIS ID
TVIS44002457
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p24.2
Reference genome
GRCh37/hg19
Start
11595898/11595665 (Hg38)
End
11595898/11595665 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3691/Upstream/1155871; hsa-mir-10398/Downstream/4545891;
Nearest TSS
ENST00000381078/Upstream/57387; ENST00000607169/Downstream/11887;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/56969, chr6-CpG: 37/Downstream/413435
Nearby gene
TMEM170B(+12141) ;
Upstream sequence
ttaggggaataaaaatatctacctatgtatctatctatagaaaataattagccaaatgtagcccaatgttgacacctgggtaaagaggatatgagagttc
Downstream sequence
tttgtattatttcagcaacttttctgtatctttcaaattatttcaaataaaaaCAAAATATCTAAGTGTATACACACATATATTTATAGCACACATATAT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate