Basic Information
VIS ID
TVIS44002462
Fusion event
HTLV-1-LOC101928923 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
156291050/155969916 (Hg38)
End
156291050/155969916 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928923
Nearest miRNA
hsa-mir-10398/Upstream/23037; hsa-mir-1913/Downstream/809762;
Nearest TSS
ENST00000381078/Upstream/514013; ENST00000637910/Downstream/529050;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/655168, chr6-CpG: 41/Downstream/427021
Nearby gene
MIR1202(+23037) ;
Upstream sequence
AGCATCATTATCCGAACTCAAATGTGTAGAAACTGAGATATATGTCATCTACTTTCAAAAGAAATGTGAAGCTGCTTGAATTAAAAGCAGATACATAATA
Downstream sequence
AAAACATGAGCATTTAGTAGAAAAACAGAGAAGCATGTCAGGAAGTgaacacatatattaaaaacctaaaataacataattcctgtgattaagtgttaaa
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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