Basic Information
VIS ID
TVIS44002479
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
68473023/63877289 (Hg38)
End
68473023/63877289 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA9F
Nearest miRNA
hsa-mir-101-2/Upstream/22643454; hsa-let-7a-1/Downstream/6932686;
Nearest TSS
ENST00000422679/Upstream/63130; ENST00000615302/Downstream/492105;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/17227, chr9-CpG: 29/Downstream/143835
Nearby gene
FRG1JP(No orient, 17655)
Upstream sequence
CTTGTATTTAAACTTAAGTAGCTACACTGGGACTCACAGTTTCATATCTTGAGTTCTAGACCAGAGCTATCAACCCTAAAGCAACGGCAAGGGGTTAGAG
Downstream sequence
GTACTCTTCTTGATTCGAATAATAAAAAATGATTTttttttgtagggacaaggtctcactgtgttgcccaagctggtctcaaacccctggccacactgct
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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