Basic Information
VIS ID
TVIS44002482
Fusion event
HTLV-1-CFAP47 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
36201775/36183658 (Hg38)
End
36201775/36183658 (Hg38)
Orient
+
Location type
Intronic
Target gene
CFAP47
Nearest miRNA
hsa-mir-23c/Upstream/3542099; hsa-let-7f-2/Downstream/1840237;
Nearest TSS
ENST00000429181/Upstream/117997; ENST00000630521/Downstream/177668;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/557458, chrX-CpG: 90/Downstream/773774
Upstream sequence
AGTATGAAATAGTAAGCATTGTTAAACTGGCTTTAAAATAATGATAGACTCGTCTACTTAAAAAGCCTCcatgagctgctctttgtaagcaatcagatac
Downstream sequence
atatattataaaataacccatttggaaccacatgaatgataaaactttatattcatcacacattttatgttgtggggacatgatccatgagcataattag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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