Basic Information
VIS ID
TVIS44002489
Fusion event
HTLV-1-LOC107987338 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
7334384/7466343 (Hg38)
End
7334384/7466343 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107987338
Nearest miRNA
hsa-mir-3690-2/Upstream/2860115; hsa-mir-12120/Downstream/6012834;
Nearest TSS
ENST00000430575/Upstream/555657; ENST00000413466/Downstream/234904;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/191160, chrY-CpG: 20/Downstream/93795
Nearby gene
PRKY(+84796) ;
Upstream sequence
ttatctatccatttatctcatccacttatctattatcttatgtgtctatcatctgtctcatctatcatctctctattcatctacatccatctatcatcta
Downstream sequence
actatcatcatctatgtcttctatctttatctatccatcacttatctatctactcatccaactatcttctatctagctactttcctacctatcaaaatct
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate