Basic Information
VIS ID
TVIS44002502
Fusion event
HTLV-1-chr14 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
74862578/74395875 (Hg38)
End
74862578/74395875 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/637056; hsa-mir-1185-1/Downstream/84258;
Nearest TSS
ENST00000550708/Upstream/47462; ENST00000555139/Downstream/13931;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/38441, chr14-CpG: 54/Downstream/29888
Nearby gene
SYNDIG1L(-10018) ;
Upstream sequence
acttacctctccgagcctcagttttatggtctataaaatgtgggctaatTCAAAAAAGAATAAGCACAGTAGCTGGCATATGGTGGCACTTTGGAATCCA
Downstream sequence
AGTCTAAAACTCTGAAGTCTCCTTTCATTGCCTGCTCGTGGTTTATCCAATGTAAGCAGGCAGCTATCCACAGGAAACCTCTGGCTCCAGCACATCCCTC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate