Basic Information
VIS ID
TVIS44002513
Fusion event
HTLV-1-LOC107985239 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
185598251/185629119 (Hg38)
End
185598251/185629119 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985239
Nearest miRNA
hsa-mir-101-1/Upstream/5190729; hsa-mir-1182/Downstream/7087209;
Nearest TSS
ENST00000473358/Upstream/592; ENST00000569292/Downstream/25883;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/311885, chr1-CpG: 69/Downstream/745873
Nearby gene
LINC01350(No orient, 631)
Upstream sequence
ATAATGAAGAAGCATTAAACAAGAAGTTTAATGACATAATATTATTTAGCAACCATACTTATTTGTGTTGGAGGACATATACACAAATGTAAACATTATC
Downstream sequence
TGCTGAGTTACAACAGTACAGAAAAAAATGAAACTTCTGGTGCTGTTCAGGATAAGCTATTTTTTTCTTCAAATATCCCATTATAAATTTTCTGTGCAGT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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