Basic Information
VIS ID
TVIS44002527
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p11
Reference genome
GRCh37/hg19
Start
24523671/24340869 (Hg38)
End
24523671/24340869 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/3941515; hsa-let-7e/Downstream/10781831;
Nearest TSS
ENST00000633603/Upstream/194168; ENST00000588318/Downstream/3299769;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/368912, chr19-CpG: 42/Downstream/3452751
Upstream sequence
ctcagaaaccgctttgtgatgtgtgcattcttctaacacagttaaactttcttttgattgagcagattggaaactcagtttttgtagaatgtgagaatgt
Downstream sequence
atatatgagagcaccttgagtcctagggtgaaaaataaactatcttcagagtaaaactagagggaaattttctgacatcctgctttgtgatgtgtgcatt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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