Basic Information
VIS ID
TVIS44002555
Fusion event
HTLV-1-LOC107986903 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
116943405/115931180 (Hg38)
End
116943405/115931180 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986903
Nearest miRNA
hsa-mir-12123/Upstream/3287597; hsa-mir-10400/Downstream/943548;
Nearest TSS
ENST00000518652/Upstream/121507; ENST00000519443/Downstream/393879;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/261784, chr8-CpG: 21/Downstream/824511
Nearby gene
LINC00536(No orient, 19331)
Upstream sequence
tcagtaaaaaagccagacacaagagaccacatattgtatgattccgtttataggacatgtccaggaaaagaaagtttatggctacagaaagtaggttaat
Downstream sequence
ggctgcctgcaggtgggaatagggattaattgtaaacaggcatgagagattttcttgagggagatgaaaatatctaagactgatttgtggtgatgtctgt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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