Basic Information
VIS ID
TVIS44002559
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
GRCh37/hg19
Start
69067843/68674063 (Hg38)
End
69067843/68674063 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/2422906; hsa-mir-1178/Downstream/599094;
Nearest TSS
ENST00000382841/Upstream/22381; ENST00000540453/Downstream/12671;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/62466, chr12-CpG: 38/Downstream/12737
Nearby gene
LOC100507250(-308) ;
Upstream sequence
CAGATATGGTTTTTTTTGGGGTGGCGAAGTGTCTGCTTTGAAGAAAAATGCATTACTTTAAGGTCAAACGGGGTCAGAGTTTAAATGTGGAGCCTGGTTG
Downstream sequence
GTACTTGTTAAATTGCGTGTCTTCCCAGTTAAGCAGTGTGATGTAGTGGGTAGGATCATTGTCAGTtaacttttggtgagttatttcacctctttacact
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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