Basic Information
VIS ID
TVIS44002565
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
3230334/3190702 (Hg38)
End
3230334/3190702 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7B
Nearest miRNA
hsa-mir-339/Upstream/663557; hsa-mir-10399/Downstream/1597863;
Nearest TSS
ENST00000635602/Upstream/16048; ENST00000478527/Downstream/7554;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/146855, chr7-CpG: 185/Downstream/110020
Nearby gene
LOC100129603(No orient, 32128)
Upstream sequence
AAGGGGTGGTACACTGCGGAGGAGGAGGGTCCACTCCAGAGGCTGCAGGTGACACACGGGACCCCCTCCATGGATGTtgctatggtttaactataaatgt
Downstream sequence
ccctccaaaatgcatacattggaacctaatacccaatgtgaaggtattaagaagtggacctggccgggtgccgtggctcatgcctgtaatcccaacactt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate