Basic Information
VIS ID
TVIS44002570
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
21862423/21679621 (Hg38)
End
21862423/21679621 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/1280267; hsa-let-7e/Downstream/13443079;
Nearest TSS
ENST00000633603/Upstream/84993; ENST00000596471/Downstream/71091;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1407, chr19-CpG: 40/Downstream/71011
Nearby gene
ZNF100(-44420) ;
Upstream sequence
TCCCTGAGCTGGGTGACACCAGATGTGGATGCTCTGGCTGCTGCTATTGTTTCTGTAGAATCAGCACCCACCAGAAGTGCAAGAGCCACCCTGCAGGTGG
Downstream sequence
AACGAGGTGGTAGCCATGGTTCCTGAAAACCACACCCTGCTGACAAATCTCAGATGCCACAAACAGAAGAACGGAGAGAAACTGCCCAAGAGCTTGAGCC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate