Basic Information
VIS ID
TVIS44002587
Fusion event
HTLV-1-MIPEPP3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
21919537/21345398 (Hg38)
End
21919537/21345398 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIPEPP3
Nearest miRNA
hsa-mir-4499/Upstream/911552; hsa-mir-1267/Downstream/2817018;
Nearest TSS
ENST00000623511/Upstream/553; ENST00000461657/Downstream/3323;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/18900, chr13-CpG: 29/Downstream/31756
Upstream sequence
aggctggagtgcagtggcatgctcaagtcctgcctccctggttcaagcgattctcctgcctcagcctcctgagtagctgggactacgggcatgtgccacc
Downstream sequence
acgcctggctgatttttatattttttattgacggggttttgtcatgttggccaggctgtcctcaaactcctcccctcaagtaatctgccctcctcggcct
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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