Basic Information
VIS ID
TVIS44002599
Fusion event
HTLV-1-LOC101929667 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
End
40758167/40531027 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1301/Upstream/5059541; hsa-mir-10b/Downstream/6846648;
Nearby gene
SLC8A1(-18592) ;
Upstream sequence
TGCAGGCATGGAGCTAGGGACAAGGCACAAAATGGCAAATGAAGCATCATTTCATTTATATATTAACATGAGTGGGTCTAAAATGTAGCTTCTTTGTAAT
Downstream sequence
ATGTGAGATTGTGATCTCATCTTCCATGACTGCGTGCCTTGATTCTAACAACATATATCATCTTCCAATACCTGCACTCATTTTTAAGAAAACAAGTTTT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate