Basic Information
VIS ID
TVIS44002615
Fusion event
HTLV-1-PHF20 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
34387142/35799220 (Hg38)
End
34387142/35799220 (Hg38)
Orient
+
Location type
Intronic
Target gene
PHF20
miRNAs that regulate target gene
hsa-mir-197-3p ; hsa-mir-21-5p ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-6802-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-3620-3p ; hsa-mir-6865-3p ; hsa-mir-483-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/345123; hsa-mir-1-1/Downstream/2717343;
Nearest TSS
ENST00000382410/Upstream/27187; ENST00000496305/Downstream/50169;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/26892, chr20-CpG: 146/Downstream/154460
Upstream sequence
TGCTCTGGCATTGCTTGGGCAGTGTAGGCTGTCAAGAGCCAAAGTATAAggctggatgcagtggctcgtgcttgtaatcctgtaatcccagcactttggg
Downstream sequence
aggcccaggcgggaggattgcttgaacccaggagtttgagatcagcctaggaacatagatactctctctgcaaaaaaaaaaaaaaaaaaaaaaaaaaaag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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