Basic Information
VIS ID
TVIS44002646
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
81314911/81087787 (Hg38)
End
81314911/81087787 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/1221204; hsa-mir-10b/Downstream/4695813;
Nearest TSS
ENST00000437798/Upstream/217597; ENST00000448431/Downstream/379159;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/765114, chr2-CpG: 93/Downstream/106293
Nearby gene
LINC01815(-373572) ;
Upstream sequence
GAGGCTGGCCACTGGAGTGATGCTTATGATGAAACATTTTTTAAAAATTTATATTCCTTCAGATGTTTCCCATTGACTCAGCTGAGAATGGGGTGAGAAC
Downstream sequence
TTAAGAGTTTACAGGGAACAAATAGAAGCTTAACAGCCATCTGGTGTCCCAGGGGCATCTGGAGCTTTTCTCTGTAGGATGTGTCATAGGCGCTCTCTCC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate