Basic Information
VIS ID
TVIS44002649
Fusion event
HTLV-1-chr21 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
End
21205496/19833182 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1147018; hsa-mir-155/Downstream/3246102;
Nearby gene
LINC00320(-909412) ;
Upstream sequence
aactagtgaattaaaatgatagttatctattatcttgcagtttctgtaggtcatagaacccatatggttgagttctctattcagaacctcactgtcctga
Downstream sequence
agtcaacatgttggccaggtctgtggtctcatgtgagcattaggttcttctttcatgcccactcaatttgttggcagagttgagtttcttgtggttgtag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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