Basic Information
VIS ID
TVIS44002718
Fusion event
HTLV-1-MIR548H3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
78257845/75642929 (Hg38)
End
78257845/75642929 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR548H3
Nearest miRNA
hsa-mir-101-2/Upstream/4832845; hsa-let-7a-1/Downstream/8326819;
Nearest TSS
ENST00000422679/Upstream/63260; ENST00000376767/Downstream/247715;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/554026, chr9-CpG: 148/Downstream/247385
Upstream sequence
TGGAAACATGTAGACTTGCTGTAATTATTGTATCTATGATGGGCTCTGTAATCAGAGAAGACTTCCCCTTATCTTCCAAACCATAATCTTAAAGTGGTAT
Downstream sequence
TTTTCCAGTAGGAAAAGACACTCTGTCAACTCTATTACTTTCATTATCAATATAAAAAGTATCTGTTGAATGGCTAGTAAATATCTGTTCCCATACAAGT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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