Basic Information
VIS ID
TVIS44002720
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
55719882/55693449 (Hg38)
End
55719882/55693449 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/241867; hsa-mir-105-1/Downstream/8092553;
Nearest TSS
ENST00000429181/Upstream/70049; ENST00000498762/Downstream/24290;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/204338, chrX-CpG: 17/Downstream/539069
Nearby gene
RRAGB(+24228) ;
Upstream sequence
ggttgatgtatttttttctcaaaaactctaaatatttcactccacactcttgcttgcatggcttctgggaagaagccatatgtaacttttatttttgtac
Downstream sequence
ctccatggcgaggtatgtttttcttctggcgtctttcaatattttttctttatttttgatattttgaagtttaaatataatttgcctgagagtagttttt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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