Basic Information
VIS ID
TVIS44002742
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
54499110/53924975 (Hg38)
End
54499110/53924975 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-15a/Upstream/1114835; hsa-mir-1267/Downstream/386997;
Nearest TSS
ENST00000623511/Upstream/109556; ENST00000616396/Downstream/202368;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/722765, chr13-CpG: 25/Downstream/3215862
Nearby gene
LINC00558(No orient, 48856)
Upstream sequence
tactggaagtcctagagagcaatcagacaagagaaagaaataaagggcatccaaatctgtaaagaggaagtcaaactgtctctgcttgctgattatatga
Downstream sequence
ttgtttactttgaaaactgtaaagactcctccagaaagctcctagaactcataaataattcagcaaagtttcaggatacaaaattaatgtacaaaaatca
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate