Basic Information
VIS ID
TVIS44002778
Fusion event
HTLV-1-ANKRD26P3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
19900221/19326081 (Hg38)
End
19900221/19326081 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
ANKRD26P3
Nearest miRNA
hsa-mir-1267/Downstream/1107697;
Nearest TSS
ENST00000623511/Upstream/62208; ENST00000413833/Downstream/18968;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/148738, chr13-CpG: 58/Downstream/18364
Upstream sequence
acagcaatacagtctgagtggggaacttcaatactccactgacaccactagagaaattattgagacagaaaatcaagaaagaaaatttgaacttaaattg
Downstream sequence
gatttcagaccaaactgatctaaccagtatttacagagcattctacccagtaactgaaagccatacctcctactcatcagcacatggaacattctccaag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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