Basic Information
VIS ID
TVIS44002845
Fusion event
HTLV-1-NGLY1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.2
Reference genome
GRCh37/hg19
Start
25810695/25769204 (Hg38)
End
25810695/25769204 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA3A
Target gene
NGLY1
miRNAs that regulate target gene
hsa-mir-186-5p
Nearest miRNA
hsa-mir-12127/Upstream/104265; hsa-let-7g/Downstream/5392500;
Nearest TSS
ENST00000440867/Upstream/32858; ENST00000460195/Downstream/13668;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/104125, chr3-CpG: 62/Downstream/13641
Upstream sequence
tcccagcactttgggagaccaaggtaggtgtatcacttgaggtcaggagttcgagaccagtctggccaacatggtgaaaccccatctctactaaaaatac
Downstream sequence
aaaagaattagccgggcatgatggcgtgcacctgcagtcccaactattcaggaggttgaggcaggagaatcacttgaacttgagaggtgaaggctgcagt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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