Basic Information
VIS ID
TVIS44002867
Fusion event
HTLV-1-LOC101928391 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.11
Reference genome
GRCh37/hg19
Start
27386005/27059514 (Hg38)
End
27386005/27059514 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
LOC101928391
Nearest miRNA
hsa-mir-12136/Upstream/504921; hsa-mir-101-1/Downstream/3679642;
Nearest TSS
ENST00000473358/Upstream/46678; ENST00000472249/Downstream/40168;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/46564, chr1-CpG: 39/Downstream/95340
Nearby gene
SLC9A1(-39295) ;
Upstream sequence
CAGGGGAAAATGTCCTGCAGTTCTTGCCCCTCATTTGGGTCAACTCCAGGACAGAAGTAAAGGCGACAGCTGCAAGGAATCAGCAGAAGCAGGACAGCAG
Downstream sequence
CCATGAGCACATGAGCCCCCAGAGCTGGCAGAAACCTTGGAGGCTTTGTGTAGCTACAGTGATGGCCACGTCTGGGCTGGCACTCACCTTATGCCAGTCT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate