Basic Information
VIS ID
TVIS44002874
Fusion event
HTLV-1-LINC00559 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
90758212/90105958 (Hg38)
End
90758212/90105958 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
LINC00559
Nearest miRNA
hsa-mir-1297/Upstream/2487218; hsa-mir-1267/Downstream/125224;
Nearest TSS
ENST00000623511/Upstream/552154; ENST00000426840/Downstream/13761;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/742437, chr13-CpG: 49/Downstream/1069037
Upstream sequence
ccctttgaaagagaagaatgaaaggaagggaaaacataaattctcagattacaatgcagttcactcttagaagaatctggaaacttacaggactgagcca
Downstream sequence
actttcatatcacagccaaatgcagtaattggttaagaatacttcctccacaggaaatagtctccgagcataagtagtgacagatttagacctcagcagc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate