Basic Information
VIS ID
TVIS44002893
Fusion event
HTLV-1-LINC02046 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
148020001/148302214 (Hg38)
End
148020001/148302214 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02046
Nearest miRNA
hsa-let-7g/Upstream/13864308; hsa-mir-1224/Downstream/3263662;
Nearest TSS
ENST00000440867/Upstream/21323; ENST00000481334/Downstream/9933;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/877610, chr3-CpG: 56/Downstream/395441
Nearby gene
AGTR1(+395657) ;
Upstream sequence
ttagtttgctgagaatggtggtttccagcttcatccatgtccctgcaaggacatgaactcattcatttttatgactgatagtattccatggtgtatatgt
Downstream sequence
gccacattttcttaatccagtctatcattgatgggcatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacatacatgtgcatgt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate